2010-04-29
Server outage
Due to some connection issues after server relocation, the web site was intermittently non-accessible this morning (European time). Fixed.
2010-04-20
Data Update
- 24010 cases from 821 publications
- 19152 CGH
- 4817 array CGH
Re-intoduction of Single Case Ideograms
The case lists and array plotting interface allow now the direct plotting of chromosomal ideograms. The output is in SVG format; so users of Internet Explorer are out of luck, I guess. Never versions of Safari and Firefox work fine.
2010-04-02
Better Linking for Array Plot Options
- clicking the GEO and EBI icons on top of the publication list will now search for all publications for which the EBI/GEO accession is known
- the publication list will now better link to aCGH series available for plotting (sometimes those are linked through their PMID; those where not shown previously)
2010-03-31
New & Re-introduced Features
Some data analysis features have been made available (again), which had existed in some form in previous versions of the site. These are:
- survival plots: data can now be filtered for cases with available clinical followup & survival information
- KM-plots: for the cases with survival information, KM-plots can be generated displaying the difference in survival for changes involving genomic regions vs. the cases without those changes
- circos plots, with optional limitation tho changes involving a specific region
2010-01-25
Code Updates
The code updates seem finished (pending bug reports). Among the new/improved implementations are:
- the re-introduction of the ISCN ish cgh annotation converter (thanks to Nikolas Stoecklein for pushing me ...)
- a multi-locus search as part of the "Locus Scores" engine as well as for the visualization & clustering part
- improved performance (e.g. clustering 2000 cases @ 86 bands is now no problem, though still there is a soft limit somewhere near 5000, due to browser time-outs)
- ...
Integration of this News blog into the site
Again a move of the "News & History" pages: With the introduction of this Wiki system, news will now be hosted here, abandoning progenetix.blogspot.com.